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FNL
| # | Team | P | GD | Points |
|---|---|---|---|---|
| 1 | 
Dukla Praha
| 24 | 16 | 47 |
| 2 | 
Vyskov
| 24 | 12 | 43 |
| 3 | 
FC Silon Taborsko
| 24 | 13 | 39 |
| 4 | 
Sigma Olomouc II
| 24 | -1 | 39 |
| 5 | 
MFK Chrudim
| 24 | 1 | 34 |
| 6 | 
Lisen
| 24 | 0 | 33 |
| 7 | 
Pribram
| 24 | -6 | 33 |
| 8 | 
Sparta Praha II
| 24 | 2 | 32 |
| 9 | 
FC Sellier and Bellot Vlasim
| 24 | 2 | 32 |
| 10 | 
FC Zbrojovka Brno
| 24 | -1 | 31 |
| 11 | 
Vysocina Jihlava
| 24 | 2 | 30 |
| 12 | 
Opava
| 24 | -3 | 30 |
| 13 | 
Viktoria Zizkov
| 24 | -7 | 29 |
| 14 | 
FK Varnsdorf
| 24 | 1 | 28 |
| 15 | 
SK Prostejov
| 24 | -17 | 24 |
| 16 | 
Kromeriz
| 24 | -14 | 23 |