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FNL
| # | Team | P | GD | Points |
|---|---|---|---|---|
| 1 | 
FC Zlin
| 15 | 19 | 39 |
| 2 | 
MFK Chrudim
| 15 | 15 | 32 |
| 3 | 
Vyskov
| 15 | 6 | 26 |
| 4 | 
Viktoria Zizkov
| 15 | 6 | 22 |
| 5 | 
FC Sellier and Bellot Vlasim
| 15 | 2 | 20 |
| 6 | 
FC Silon Taborsko
| 15 | 1 | 20 |
| 7 | 
Slavia Prague II
| 15 | 4 | 19 |
| 8 | 
Sigma Olomouc II
| 15 | 0 | 19 |
| 9 | 
Lisen
| 15 | -1 | 19 |
| 10 | 
Opava
| 14 | -5 | 19 |
| 11 | 
Sparta Praha II
| 15 | -2 | 16 |
| 12 | 
SK Prostejov
| 14 | -6 | 16 |
| 13 | 
Vysocina Jihlava
| 15 | -8 | 15 |
| 14 | 
FC Zbrojovka Brno
| 15 | -11 | 14 |
| 15 | 
Banik Ostrava II
| 15 | -13 | 14 |
| 16 | 
FK Varnsdorf
| 15 | -7 | 10 |